Nextflow Pipelines
Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.
10 pipeline(s) matching "single-cell".
| Pipeline | Keywords | Description |
|---|---|---|
|
nf-core/hadge
1.0.0
|
cell-hashing deconvolution demultiplexing donor-assignment +7 | |
|
nf-core/marsseq
1.0.3
|
facs-sorting mars-seq single-cell single-cell-rna-seq +2 | |
|
nf-core/mcmicro
2.0.0
|
bioformats image-analysis image-processing microscopy +8 | |
|
nf-core/molkart
1.2.0
|
fish image-processing imaging molecularcartography +4 | |
|
nf-core/pixelator
5.0.3
|
molecular-pixelation pixelator pixelgen-technologies proteins +2 | |
|
nf-core/scdownstream
0.0.0-3c2644c
|
clustering dimensionality-reduction integration quality-control +2 | |
|
nf-core/scflow
0.0.0-c2c9728
|
rnaseq single-cell single-nuclei single-nuclei-rna-sequencing | |
|
nf-core/scnanoseq
1.3.0
|
10xgenomics long-read-sequencing nanopore rna-seq +3 | |
|
nf-core/scrnaseq
4.2.0
|
10x-genomics 10xgenomics alevin bustools +5 | |
|
nf-core/spatialvi
0.0.0-17d6cb0
|
10x-genomics 10xgenomics image-processing microscopy +7 |