nf-core/agat/sqstatbasic @ 0.0.0-3fc6d40
Summary
Provides basic statistics in text format from a GFF/GTF annotation file
Get started
Add the following snippet to your workflow script to include this module.
include { AGAT_SQSTATBASIC } from 'nf-core/agat/sqstatbasic'
License
MIT License
Process
Name
|
AGAT_SQSTATBASIC |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gff
file
|
Annotation file in GFF3/GTF format *.{gff, gtf}
|
Output
2 channels
#1
stats_txt
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*.txt
file
|
Output of Statistics execution *.{txt}
|
#2
versions_agat
tuple
${task.process}
string
|
The name of the process |
|---|---|
agat
string
|
The name of the tool |
agat --version | sed 's/v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| agat | AGAT is a toolkit for manipulation and getting information from GFF/GTF annotation files | https://github.com/NBISweden/AGAT |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:01:25 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fagat%2Fsqstatbasic/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/agat/sqstatbasic/blobs/sha256:06aeb9a2856f61e3cca0edc5518cfe668576019adcb20a948451f6cfecb5e5bf |
| Size | 2.2 KB |
| Checksum | sha256:06aeb9a2856f61e3cca0edc5518cfe668576019adcb20a948451f6cfecb5e5bf |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:01:53 (UTC) | 3 | 2.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:01:25 (UTC) | 3 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:41:54 (UTC) | 3 | 2.1 KB |