nf-core/anndata/barcodes @ 0.0.0-0c7146d
Summary
Module to subset AnnData object to cells with matching barcodes from the csv file
Get started
Add the following snippet to your workflow script to include this module.
include { ANNDATA_BARCODES } from 'nf-core/anndata/barcodes'
License
MIT License
Process
Name
|
ANNDATA_BARCODES |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
h5ad
file
|
Anndata object as H5AD file *.h5ad
|
barcodes
file
|
CSV file containing barcodes. Barcodes are written in plain text. One column, no header *.csv
|
Output
2 channels
#1
h5ad
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] *.h5ad
|
|---|---|
*.h5ad
file
|
AnnData file containing all cells with barcodes that match those in the input barcodes csv file *.h5ad
|
#2
versions_anndata
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| anndata | An annotated data matrix. | https://anndata.readthedocs.io |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:42:39 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fanndata%2Fbarcodes/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/anndata/barcodes/blobs/sha256:21b027bb1880b567f4106fffe16a78b80403ba239acbd32d7014dee766c570b5 |
| Size | 2.8 KB |
| Checksum | sha256:21b027bb1880b567f4106fffe16a78b80403ba239acbd32d7014dee766c570b5 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:23 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:42:39 (UTC) | 4 | 2.8 KB |