Nextflow Modules
Showing module(s) with keyword "anndata"
| Module | Keywords | Description |
|---|---|---|
| cellgeni/anndata/concat | concatenation single-cell anndata | In-memory concatenation of AnnData objects using anndata.concat. |
| cellgeni/anndata/concatondisk | concatenation single-cell anndata | Memory-efficient on-disk concatenation of AnnData objects using anndata.experimental.concat_on_disk. |
| nf-core/anndata/barcodes | single-cell barcodes anndata subsetting transcriptomics | Module to subset AnnData object to cells with matching barcodes from the csv file |
| nf-core/anndata/getsize | anndata single-cell scanpy | Get the size (n_cells or n_genes) of an anndata object stored as a h5ad file |
| nf-core/metaspace/converter | anndata spatialdata metabolomics mass spectrometry imaging | Export METASPACE datasets to AnnData and SpatialData objects |
| nf-core/scanpy/hashsolo | anndata single-cell hashing demultiplexing scanpy | Probabilistic demultiplexing of cell hashing data |