nf-core/ashlar @ 0.0.0-0c7146d
Summary
Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
Get started
Add the following snippet to your workflow script to include this module.
include { ASHLAR } from 'nf-core/ashlar'
License
MIT License
Process
Name
|
ASHLAR |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
images
file
|
Overlapping tile image data in formats from most commercial microscopes *.{ome.tiff,ome.tif,rcpnl,btf,nd2,tiff,tif,czi}
|
opt_dfp
file
|
Optional dark field image data |
|---|
opt_ffp
file
|
Optional flat field image data |
|---|
Output
2 channels
#1
tif
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.ome.tif
file
|
A pyramidal, tiled OME-TIFF file created from input images. *.ome.tif
|
#2
versions_ashlar
tuple
${task.process}
string
|
The name of the process |
|---|---|
ashlar
string
|
The name of the tool |
ashlar --version | sed 's/^.*ashlar //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ashlar | Alignment by Simultaneous Harmonization of Layer/Adjacency Registration | https://labsyspharm.github.io/ashlar/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:43:28 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fashlar/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ashlar/blobs/sha256:4642ccd45b8b2e6663fe5fa2f7045a66c95458ecc3604e400931e1cd22afa1ab |
| Size | 3.0 KB |
| Checksum | sha256:4642ccd45b8b2e6663fe5fa2f7045a66c95458ecc3604e400931e1cd22afa1ab |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:53 (UTC) | 4 | 3.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:02:04 (UTC) | 4 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:28 (UTC) | 2 | 3.0 KB |