nf-core/atlasgeneannotationmanipulation/gtf2featureannotation @ 0.0.0-02a6b4c
Summary
Generate tables of feature metadata from GTF files
Get started
Add the following snippet to your workflow script to include this module.
include { ATLASGENEANNOTATIONMANIPULATION_GTF2FEATUREANNOTATION } from 'nf-core/atlasgeneannotationmanipulation/gtf2featureannotation'
License
MIT License
Name
|
ATLASGENEANNOTATIONMANIPULATION_GTF2FEATUREANNOTATION |
|---|
meta
map
|
Groovy Map containing information on input GTF file e.g. [ id:'test' ] |
|---|---|
gtf
file
|
gtf annotation file *.{gtf}
|
meta2
map
|
Groovy Map containing information in input FASTA file e.g. [ id:'test' ] |
|---|---|
fasta
file
|
An optional cDNA file for extracting meta info and/or filtering. *.{gtf}
|
filtered_cdna
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*.fa.gz
file
|
Where --parse-cdnas is specified in ext.args and an input fasta file is provided, filtered sequences are output to the specified file. No file will be output if this is not specified (for example for use of --dummy-from-cdnas only). See documentation at https://github.com/ebi-gene-expression-group/atlas-gene-annotation-manipulation. *.{tsv}
|
feature_annotation
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*.anno.tsv
file
|
TSV file with feature annotation *.{tsv}
|
versions_atlasgeneannotationmanipulation
tuple
${task.process}
string
|
The name of the process |
|---|---|
atlas-gene-annotation-manipulation
string
|
The name of the tool |
1.1.1
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| atlasgeneannotationmanipulation | Scripts for manipulating gene annotation | https://github.com/ebi-gene-expression-group/atlas-gene-annotation-manipulation |
| Version | 0.0.0-02a6b4c |
|---|---|
| Commit ID | c4ed7fdd281d290c622c5d93fa173effc0217fdb |
| Release Date | 13 Apr 2026 15:00:06 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fatlasgeneannotationmanipulation%2Fgtf2featureannotation/0.0.0-02a6b4c/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/atlasgeneannotationmanipulation/gtf2featureannotation/blobs/sha256:5ac63ec2003052a6bcda72c1d26b8fefdf26b5eef90b361c2913460cb566f1cb |
| Size | 2.8 KB |
| Checksum | sha256:5ac63ec2003052a6bcda72c1d26b8fefdf26b5eef90b361c2913460cb566f1cb |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-c4ed7fd | 27 Apr 2026 15:00:06 (UTC) | 0 | 2.9 KB | |
| 0.0.0-6c4ed3a | 23 Apr 2026 15:03:03 (UTC) | 3 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:02:18 (UTC) | 3 | 2.8 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:00:05 (UTC) | 3 | 2.8 KB | |
| 0.0.0-02a6b4c | 13 Apr 2026 15:00:06 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:43 (UTC) | 2 | 2.8 KB |