Nextflow Modules
Showing module(s) with keyword "gene"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/agat/spkeeplongestisoform | Process | gff gtf filter isoform gene longest agat | Filters GFF records to keep only the longest isoform per gene |
| nf-core/atlasgeneannotationmanipulation/gtf2featureannotation | Process | gtf gene annotation | Generate tables of feature metadata from GTF files |
| nf-core/cafe | Process | gene phylogeny genomics | Analysis of gene family evolution |
| nf-core/custom/tx2gene | Process | gene gtf pseudoalignment rsem transcript | Make a transcript/gene mapping from a GTF and cross-reference with transcript quantifications. |
| nf-core/orthofinder | Process | genomics orthogroup orthologs gene duplication tree phylogeny | OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics. |
| nf-core/summarizedexperiment/summarizedexperiment | Process | gene transcript sample matrix assay | SummarizedExperiment container |
| nf-core/tsebra | Process | genomics transcript selector gene prediction evidence | Transcript Selector for BRAKER TSEBRA combines gene predictions by selecting transcripts based on their extrisic evidence support |
| nf-core/tximeta/tximport | Process | gene kallisto pseudoalignment rsem salmon transcript | Import transcript-level abundances and estimated counts for gene-level analysis packages |