nf-core/autocycler/combine @ 0.0.0-6c4ed3a
Summary
Merge resolved cluster assemblies into final consensus outputs with Autocycler.
Get started
Add the following snippet to your workflow script to include this module.
include { AUTOCYCLER_COMBINE } from 'nf-core/autocycler/combine'
License
MIT License
Process
Name
|
AUTOCYCLER_COMBINE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
clusters
file
|
Final cluster assembly graphs (GFA) to be combined into consensus sequences. *.gfa
|
Output
4 channels
#1
gfa
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
combine/${prefix}/consensus_assembly.gfa
file
|
Consensus assembly graph generated by Autocycler. combine/*/consensus_assembly.gfa
|
#2
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
combine/${prefix}/consensus_assembly.fasta
file
|
Consensus genome sequence generated by Autocycler. combine/*/consensus_assembly.fasta
|
#3
stats
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
combine/${prefix}/consensus_assembly.yaml
file
|
Run statistics for the combine step. combine/*/consensus_assembly.yaml
|
#4
versions_autocycler
tuple
${task.process}
string
|
The name of the process |
|---|---|
autocycler
string
|
The name of the tool |
autocycler --version | sed 's/^[^ ]* //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| autocycler | A tools for generating consensus long-read assemblies for bacterial genomes. | https://github.com/rrwick/Autocycler/wiki |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:03:07 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fautocycler%2Fcombine/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/autocycler/combine/blobs/sha256:76c9848fabf7ee10d995074b7b290ce294176369f11e1f0a2b06fe0c16e11aac |
| Size | 3.4 KB |
| Checksum | sha256:76c9848fabf7ee10d995074b7b290ce294176369f11e1f0a2b06fe0c16e11aac |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:03:07 (UTC) | 3 | 3.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:02:23 (UTC) | 3 | 3.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:49 (UTC) | 2 | 3.4 KB |