Nextflow Modules
Showing module(s) with keyword "autocycler"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/autocycler/cluster | Process | autocycler genome-assembly clustering long-read | Cluster replicons in compressed assemblies with Autocycler. |
| nf-core/autocycler/combine | Process | autocycler genome-assembly consensus long-read | Merge resolved cluster assemblies into final consensus outputs with Autocycler. |
| nf-core/autocycler/compress | Process | autocycler genome-assembly compression long-read | Package candidate assemblies for clustering by Autocycler. |
| nf-core/autocycler/resolve | Process | autocycler genome-assembly graph-resolution long-read | Resolve trimmed assembly graphs into final contigs within Autocycler. |
| nf-core/autocycler/subsample | Process | autocycler subsampling long-read | Downsample long-read sequencing data to the requested coverage using Autocycler. |
| nf-core/autocycler/trim | Process | autocycler genome-assembly graph-trimming long-read | Trim cluster assembly graphs to remove unsupported segments prior to resolution. |
| nf-core/fasta_consensus_autocycler | Workflow | autocycler consensus assembly fasta | Generate consensus assemblies and assembly graphs from grouped contig FASTA files using autocycler |