nf-core/autocycler/compress @ 0.0.0-6c4ed3a
Summary
Package candidate assemblies for clustering by Autocycler.
Get started
Add the following snippet to your workflow script to include this module.
include { AUTOCYCLER_COMPRESS } from 'nf-core/autocycler/compress'
License
MIT License
Process
Name
|
AUTOCYCLER_COMPRESS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
assemblies
file
|
Candidate assembly files (typically FASTA) generated for the sample. *.{fasta,fa,fasta.gz,fa.gz}
|
Output
3 channels
#1
gfa
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
compress/${prefix}/*.gfa
file
|
Assembly graph files ready for clustering. compress/*/*.gfa
|
#2
stats
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
compress/${prefix}/*.yaml
file
|
Summary statistics generated during compression. compress/*/*.yaml
|
#3
versions_autocycler
tuple
${task.process}
string
|
The name of the process |
|---|---|
autocycler
string
|
The name of the tool |
autocycler --version | sed 's/^[^ ]* //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| autocycler | A tools for generating consensus long-read assemblies for bacterial genomes. | https://github.com/rrwick/Autocycler/wiki |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:03:08 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fautocycler%2Fcompress/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/autocycler/compress/blobs/sha256:e77cd3957f4de6f63021726c20bb5708418a686cc8a4cf7985053b18e5c0938b |
| Size | 2.4 KB |
| Checksum | sha256:e77cd3957f4de6f63021726c20bb5708418a686cc8a4cf7985053b18e5c0938b |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:03:08 (UTC) | 4 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:02:24 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:51 (UTC) | 3 | 2.4 KB |