nf-core/autocycler/resolve @ 0.0.0-3fc6d40
Summary
Resolve trimmed assembly graphs into final contigs within Autocycler.
Get started
Add the following snippet to your workflow script to include this module.
include { AUTOCYCLER_RESOLVE } from 'nf-core/autocycler/resolve'
License
MIT License
Process
Name
|
AUTOCYCLER_RESOLVE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
gfa
file
|
Trimmed assembly graph in GFA format from the previous step. *.gfa
|
Output
4 channels
#1
merged
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
resolve/${prefix}/${prefix}_4_merged.gfa
file
|
Merged assembly graph after bridging. resolve/*/*_4_merged.gfa
|
#2
bridged
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
resolve/${prefix}/${prefix}_3_bridged.gfa
file
|
Assembly graph with bridges resolved. resolve/*/*_3_bridged.gfa
|
#3
resolved
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
resolve/${prefix}/${prefix}_5_final.gfa
file
|
Final resolved assembly graph. resolve/*/*_5_final.gfa
|
#4
versions_autocycler
tuple
${task.process}
string
|
The name of the process |
|---|---|
autocycler
string
|
The name of the tool |
autocycler --version | sed 's/^[^ ]* //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| autocycler | A tools for generating consensus long-read assemblies for bacterial genomes. | https://github.com/rrwick/Autocycler/wiki |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:02:25 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fautocycler%2Fresolve/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/autocycler/resolve/blobs/sha256:a6f11e8f09ccbedff6afece097094405bb832de942c33dff727332b575a6e528 |
| Size | 3.1 KB |
| Checksum | sha256:a6f11e8f09ccbedff6afece097094405bb832de942c33dff727332b575a6e528 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:03:09 (UTC) | 3 | 3.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:02:25 (UTC) | 3 | 3.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:53 (UTC) | 3 | 3.0 KB |