nf-core/bacphlip @ 0.0.0-3fc6d40
Summary
A bacteriophage lifestyle prediction tool
Get started
Add the following snippet to your workflow script to include this module.
include { BACPHLIP } from 'nf-core/bacphlip'
License
MIT License
Process
Name
|
BACPHLIP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
FASTA file containing phage contigs/scaffolds/chromosomes (if it is a multi-FASTA file be sure to add the *.{fasta,fna,fa}
|
Output
3 channels
#1
bacphlip_results
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bacphlip
file
|
TSV file containing Temperate and Virulent scores for each phage sequence *.bacphlip
|
#2
hmmsearch_results
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.hmmsearch.tsv
file
|
TSV file containing binary output indicating gene presence/absence based on hmmsearch results *.hmmsearch.tsv
|
#3
versions_bacphlip
tuple
${task.process}
string
|
The name of the process |
|---|---|
bacphlip
string
|
The name of the tool |
0.9.6
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bacphlip | A Random Forest classifier to predict bacteriophage lifestyle | https://github.com/adamhockenberry/bacphlip |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:02:29 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbacphlip/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bacphlip/blobs/sha256:74359064fe508c49cfeea498fb6f60954799f4ecfe3152a9c17894328fe15994 |
| Size | 2.4 KB |
| Checksum | sha256:74359064fe508c49cfeea498fb6f60954799f4ecfe3152a9c17894328fe15994 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:03:12 (UTC) | 5 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:02:29 (UTC) | 4 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:44:01 (UTC) | 4 | 2.4 KB |