Nextflow Modules
Showing module(s) with keyword "hmmsearch"
| Module | Keywords | Description |
|---|---|---|
| nf-core/ampcombi | antimicrobial peptides amps parsing reporting align macrel amplify hmmsearch neubi ampir DRAMP | A tool to parse and summarise results from antimicrobial peptides tools and present functional classification. |
| nf-core/ampcombi2/complete | antimicrobial peptides amps parsing reporting align macrel amplify hmmsearch neubi ampir ampgram amptransformer DRAMP | A submodule that merges all output summary tables from ampcombi/parsetables in one summary file. |
| nf-core/ampcombi2/parsetables | antimicrobial peptides amps parsing reporting align macrel amplify hmmsearch neubi ampir ampgram amptransformer DRAMP MMseqs2 InterProScan | A submodule that parses and standardizes the results from various antimicrobial peptide identification tools. |
| nf-core/bacphlip | phage lifestyle temperate virulent bacphlip hmmsearch | A bacteriophage lifestyle prediction tool |
| nf-core/hmmer/hmmbuild | search hidden Markov model HMM hmmer hmmsearch | create an hmm profile from a multiple sequence alignment |
| nf-core/hmmer/hmmrank | hmmer hmmsearch rank | R script that scores output from multiple runs of hmmer/hmmsearch |
| nf-core/hmmer/hmmsearch | Hidden Markov Model HMM hmmer hmmsearch | search profile(s) against a sequence database |