nf-core/bcftools/filter @ 0.0.0-0c7146d
Summary
Filters VCF files
Get started
Add the following snippet to your workflow script to include this module.
include { BCFTOOLS_FILTER } from 'nf-core/bcftools/filter'
License
MIT License
Process
Name
|
BCFTOOLS_FILTER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
VCF input file *.{vcf,bcf,vcf.gz,bcf.gz}
|
tbi
file
|
VCF index file *.tbi
|
Output
4 channels
#1
csi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.csi
file
|
Default VCF file index *.csi
|
#2
tbi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tbi
file
|
Alternative VCF file index *.tbi
|
#3
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.${extension}
file
|
VCF filtered output file *.{vcf,bcf,vcf.gz,bcf.gz}
|
#4
versions_bcftools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bcftools
string
|
The tool name |
bcftools --version | sed '1!d; s/^.*bcftools //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| filter | Apply fixed-threshold filters to VCF files. | http://samtools.github.io/bcftools/bcftools.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:45:51 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Ffilter/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bcftools/filter/blobs/sha256:6415990d1d257bc7b7721b2d970f8a7f8868ff6477d7384ae1115f5c5fd95d2d |
| Size | 3.8 KB |
| Checksum | sha256:6415990d1d257bc7b7721b2d970f8a7f8868ff6477d7384ae1115f5c5fd95d2d |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:04:55 (UTC) | 3 | 3.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:45:51 (UTC) | 4 | 3.8 KB |