Nextflow Modules
Showing module(s) with keyword "filtering"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bcftools/filter | variant calling filtering VCF | Filters VCF files |
| nf-core/filtlong | nanopore quality control QC filtering long reads short reads | Filtlong filters long reads based on quality measures or short read data. |
| nf-core/hifiadapterfilt/hifiadapterfilt | pacbio hifi adapter filtering long reads ccs | Remove adapter sequences from PacBio HiFi (CCS) reads using BLAST-based detection. Produces filtered FASTQ output, filtering statistics, BLAST hits, and a list of blocked read IDs. |
| nf-core/hifitrimmer/filterbam | pacbio bam fasta hifi_trimmer filtering trimming quality control adapter removal | Run hifi_trimmer filter_bam to filter and trim adapter hits from PacBio HiFi reads (BAM/FASTA/FASTQ) using BLAST against adapter sequences. Primary output is filtered FASTA/FASTQ. |
| nf-core/khmer/trimlowabund | quality control genomics filtering reads khmer k-mer | Removes low abundance k-mers from FASTA/FASTQ files |
| nf-core/lofreq/filter | variant calling low frequency variant calling filtering lofreq lofreq/filter | Lofreq subcommand to remove variants with low coverage or strand bias potential |
| nf-core/nanofilt | nanopore filtering QC | Filtering and trimming of Oxford Nanopore Sequencing data |
| nf-core/pydamage/analyze | ancient DNA aDNA de novo assembly filtering damage deamination miscoding lesions C to T palaeogenomics archaeogenomics palaeogenetics archaeogenetics | Damage parameter estimation for ancient DNA |
| nf-core/pydamage/filter | ancient DNA aDNA de novo assembly filtering damage deamination miscoding lesions C to T palaeogenomics archaeogenomics palaeogenetics archaeogenetics | Damage parameter estimation for ancient DNA |
| nf-core/seqtk/subseq | filtering selection fastx | Select only sequences that match the filtering condition |
| nf-core/sortmerna | filtering mapping clustering rRNA ribosomal RNA | Local sequence alignment tool for filtering, mapping and clustering. |
| nf-core/trtools/dumpstr | tandem repeats str vcf filtering trtools | DumpSTR filters VCF files with TR genotypes, performing call-level and locus-level filtering, and outputs a filtered VCF file. |