Nextflow Registry | Nextflow Modules

Nextflow Modules

Showing module(s) with keyword "filtering"

Module	Keywords	Description
nf-core/bcftools/filter	variant calling filtering VCF	Filters VCF files
nf-core/filtlong	nanopore quality control QC filtering long reads short reads	Filtlong filters long reads based on quality measures or short read data.
nf-core/hifitrimmer/filterbam	pacbio bam fasta hifi_trimmer filtering trimming quality control adapter removal	Run hifi_trimmer filter_bam to filter and trim adapter hits from PacBio HiFi reads (BAM/FASTA/FASTQ) using BLAST against adapter sequences. Primary output is filtered FASTA/FASTQ.
nf-core/khmer/trimlowabund	quality control genomics filtering reads khmer k-mer	Removes low abundance k-mers from FASTA/FASTQ files
nf-core/lofreq/filter	variant calling low frequency variant calling filtering lofreq lofreq/filter	Lofreq subcommand to remove variants with low coverage or strand bias potential
nf-core/nanofilt	nanopore filtering QC	Filtering and trimming of Oxford Nanopore Sequencing data
nf-core/pydamage/analyze	ancient DNA aDNA de novo assembly filtering damage deamination miscoding lesions C to T palaeogenomics archaeogenomics palaeogenetics archaeogenetics	Damage parameter estimation for ancient DNA
nf-core/pydamage/filter	ancient DNA aDNA de novo assembly filtering damage deamination miscoding lesions C to T palaeogenomics archaeogenomics palaeogenetics archaeogenetics	Damage parameter estimation for ancient DNA
nf-core/seqtk/subseq	filtering selection fastx	Select only sequences that match the filtering condition
nf-core/sortmerna	filtering mapping clustering rRNA ribosomal RNA	Local sequence alignment tool for filtering, mapping and clustering.