nf-core/bcftools/isec @ 0.0.0-6c4ed3a
Summary
Apply set operations to VCF files
Get started
Add the following snippet to your workflow script to include this module.
include { BCFTOOLS_ISEC } from 'nf-core/bcftools/isec'
License
MIT License
Name
|
BCFTOOLS_ISEC |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcfs
list
|
List containing 2 or more vcf/bcf files. These must be compressed and have an associated index. e.g. [ 'file1.vcf.gz', 'file2.vcf' ] *.{vcf,vcf.gz,bcf,bcf.gz}
|
tbis
list
|
List containing the tbi index files corresponding to the vcf/bcf input files *.tbi
|
file_list
file
|
Optional text file containing the list of VCF/BCF files to be processed by bcftools isec, one per line. |
targets_file
file
|
Optional file containing target regions to restrict the analysis to. |
regions_file
file
|
Optional file containing regions to restrict the analysis to. |
results
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}
directory
|
Directory containing the output files from bcftools isec ${prefix}/
|
versions_bcftools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bcftools
string
|
The tool name |
bcftools --version | sed '1!d; s/^.*bcftools //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| isec | Computes intersections, unions and complements of VCF files. | http://samtools.github.io/bcftools/bcftools.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:04:57 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Fisec/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bcftools/isec/blobs/sha256:d86e345b91495fb8a78589cf4d1127902994ad200aeeafddcec46f1d844286cd |
| Size | 3.8 KB |
| Checksum | sha256:d86e345b91495fb8a78589cf4d1127902994ad200aeeafddcec46f1d844286cd |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:04:57 (UTC) | 3 | 3.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:45:55 (UTC) | 3 | 3.8 KB |