nf-core/bedtools/jaccard @ 0.0.0-0c7146d
Summary
Calculate Jaccard statistic b/w two feature files.
Get started
Add the following snippet to your workflow script to include this module.
include { BEDTOOLS_JACCARD } from 'nf-core/bedtools/jaccard'
License
MIT License
Process
Name
|
BEDTOOLS_JACCARD |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input_a
file
|
VCF,GFF or BED file to use with the *.{vcf,vcf.gz,bed,bed.gz,gff}
|
input_b
file
|
VCF,GFF or BED file to use with the *.{vcf,vcf.gz,bed,bed.gz,gff}
|
#2
tuple
meta2
map
|
Groovy Map containing genome file information e.g. [ id:'test', single_end:false ] |
|---|---|
genome_file
file
|
A file containing all the contigs of the genome used to create the input files *.{txt,sizes,fai}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
TSV file containing the results *.tsv
|
#2
versions_bedtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
bedtools
string
|
The name of the tool |
bedtools --version | sed -e 's/bedtools v//g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bedtools | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:47:01 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbedtools%2Fjaccard/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bedtools/jaccard/blobs/sha256:7a4c0e7e4e149d6a0d8486d444c993e62846fa25e472903ed50826740cf0b648 |
| Size | 2.5 KB |
| Checksum | sha256:7a4c0e7e4e149d6a0d8486d444c993e62846fa25e472903ed50826740cf0b648 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:05:40 (UTC) | 5 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:03:44 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:47:01 (UTC) | 4 | 2.5 KB |