nf-core/bedtools/makewindows @ 0.0.0-3fc6d40
Summary
Makes adjacent or sliding windows across a genome or BED file.
Get started
Add the following snippet to your workflow script to include this module.
include { BEDTOOLS_MAKEWINDOWS } from 'nf-core/bedtools/makewindows'
License
MIT License
Process
Name
|
BEDTOOLS_MAKEWINDOWS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
regions
file
|
BED file OR Genome details file () *.{bed,tab,fai}
|
Output
2 channels
#1
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bed
file
|
BED file containing the windows *.bed
|
#2
versions_bedtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
bedtools
string
|
The name of the tool |
bedtools --version | sed -e 's/bedtools v//g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bedtools | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. | https://bedtools.readthedocs.io |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:03:46 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbedtools%2Fmakewindows/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bedtools/makewindows/blobs/sha256:fefb9a275f7ba23f64a93d852218df12168c80436986fd54435606c4ec8e2ffd |
| Size | 2.6 KB |
| Checksum | sha256:fefb9a275f7ba23f64a93d852218df12168c80436986fd54435606c4ec8e2ffd |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:05:41 (UTC) | 4 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:03:46 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:47:03 (UTC) | 3 | 2.5 KB |