nf-core/bftools/showinf @ 0.0.0-6c4ed3a
Summary
Extract OME xml data from OME-tif
Get started
Add the following snippet to your workflow script to include this module.
include { BFTOOLS_SHOWINF } from 'nf-core/bftools/showinf'
License
MIT License
Process
Name
|
BFTOOLS_SHOWINF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
image
file
|
Path to image file containing OME metadata |
Output
2 channels
#1
xml
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.xml.gz
file
|
Compressed XML with OME tag metadata |
#2
versions_bftools
tuple
${task.process}
string
|
The name of the process |
|---|---|
bftools
string
|
The name of the tool |
showinf -version | sed -n '1s/[^ ]* //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bftools | Suite of tools to handle several imaging protocols. | https://www.openmicroscopy.org/bio-formats |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:05:59 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbftools%2Fshowinf/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bftools/showinf/blobs/sha256:4c902fcb0944fca5251f8321f88b1a339bbe818ffcc2457c4fc311e9ab310e4e |
| Size | 2.2 KB |
| Checksum | sha256:4c902fcb0944fca5251f8321f88b1a339bbe818ffcc2457c4fc311e9ab310e4e |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:05:59 (UTC) | 4 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:04:03 (UTC) | 3 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:47:29 (UTC) | 3 | 2.2 KB |