Nextflow Modules
Showing module(s) with keyword "ome-tif"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bftools/showinf | metadata ome-tif ome-tiff imaging bioinformatics tools | Extract OME xml data from OME-tif |
| nf-core/imc2mc | imaging ome-tif staging MCMICRO | Staging module transforming Imaging Mass Cytometry .txt files to .tif files with OME-XML metadata. Includes optional hot pixel removal. |
| nf-core/mcstaging/imc2mc | imaging ome-tif staging MCMICRO | Staging module for MCMICRO transforming Imaging Mass Cytometry .txt files to .tif files with OME-XML metadata. Includes optional hot pixel removal. |
| nf-core/mcstaging/macsima2mc | imaging ome-tif mcmicro staging spatial-omics macsima | Staging module for MCMICRO transforming MACSima data sets for being registered with ASHLAR in MCMICRO. |
| nf-core/mcstaging/phenoimager2mc | imaging registration ome-tif Staging MCMICRO | Staging module for MCMICRO transforming PhenoImager .tif files into stacked and normalized ome-tif files per cycle, compatible as ASHLAR input. |
| nf-core/phenoimager2mc | imaging registration ome-tif Staging MCMICRO | Formatting PhenoImager TIFF output files into stacked and normalized OME-TIFF files per cycle, compatible as ASHLAR and MCMICRO input. |