nf-core/blast/makeblastdb @ 0.0.0-0c7146d
Summary
Builds a BLAST database
Get started
Add the following snippet to your workflow script to include this module.
include { BLAST_MAKEBLASTDB } from 'nf-core/blast/makeblastdb'
License
MIT License
Process
Name
|
BLAST_MAKEBLASTDB |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input fasta file *.{fa,fasta,fa.gz,fasta.gz}
|
taxid_map
file
|
taxID mapping files are tab-delimited text files used to map custom sequence IDs to NCBI taxonomic identifiers (taxIDs) during the creation of a BLAST database *.txt
|
|---|
Output
2 channels
#1
db
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}
directory
|
Output directory containing blast database files *
|
#2
versions_makeblastdb
tuple
${task.process}
string
|
The name of the process |
|---|---|
makeblastdb
string
|
The name of the tool |
makeblastdb -version 2>&1 | sed 's/^.*makeblastdb: //; s/ .*\$//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| blast | BLAST finds regions of similarity between biological sequences. | https://blast.ncbi.nlm.nih.gov/Blast.cgi |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:49:08 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fblast%2Fmakeblastdb/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/blast/makeblastdb/blobs/sha256:cc48e943be368e0bb0c79af7633279f7599386aef2c155100d342526cf538ccf |
| Size | 3.2 KB |
| Checksum | sha256:cc48e943be368e0bb0c79af7633279f7599386aef2c155100d342526cf538ccf |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:07:37 (UTC) | 2 | 3.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:49:08 (UTC) | 3 | 3.2 KB |