Nextflow Modules
Showing module(s) with keyword "blast"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/blast/blastdbcmd | Process | fasta blast database retrieval identifier | Retrieve entries from a BLAST database |
| nf-core/blast/blastn | Process | fasta blast blastn DNA sequence taxids | Queries a BLAST DNA database |
| nf-core/blast/blastp | Process | fasta blast blastp protein | BLASTP (Basic Local Alignment Search Tool- Protein) compares an amino acid (protein) query sequence against a protein database |
| nf-core/blast/makeblastdb | Process | fasta blast database | Builds a BLAST database |
| nf-core/blast/tblastn | Process | fasta blast tblastn DNA sequence | Queries a BLAST DNA database |
| nf-core/blast/updateblastdb | Process | fasta blast download database | Downloads a BLAST database from NCBI |
| nf-core/hifiadapterfilt/downloaddb | Process | pacbio hifi adapter blast database download | Downloads the pre-built PacBio adapter BLAST database from the HiFiAdapterFilt GitHub repository. The database contains two adapter sequences: NGB00972.1 (Pacific Biosciences Blunt Adapter, 45 bp) and NGB00973.1 (C2 Primer, 35 bp). This module is consumed by hifiadapterfilt/hifiadapterfilt as a prerequisite to provide the BLAST database for adapter detection. |
| nf-core/windowmasker/convert | Process | fasta blast windowmasker | Masks out highly repetitive DNA sequences with low complexity in a genome |