nf-core/blast/tblastn @ 0.0.0-0c7146d
Summary
Queries a BLAST DNA database
Get started
Add the following snippet to your workflow script to include this module.
include { BLAST_TBLASTN } from 'nf-core/blast/tblastn'
License
MIT License
Process
Name
|
BLAST_TBLASTN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input fasta file containing queries sequences *.{fa,fasta,fa.gz,fasta.gz}
|
#2
tuple
meta2
map
|
Groovy Map containing db information e.g. [ id:'test2', single_end:false ] |
|---|---|
db
directory
|
Directory containing the blast database *
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
File containing blastn hits *.txt
|
#2
versions_tblastn
tuple
${task.process}
string
|
The name of the process |
|---|---|
tblastn
string
|
The name of the tool |
tblastn -version 2>&1 | sed 's/^.*tblastn: //; s/ .*\$//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| blast | Protein to Translated Nucleotide BLAST. | https://blast.ncbi.nlm.nih.gov/Blast.cgi |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:49:11 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fblast%2Ftblastn/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/blast/tblastn/blobs/sha256:1e8165f63568116907f0e48dcf5610095f90eac0e3de4f004823f58e6635baf5 |
| Size | 2.8 KB |
| Checksum | sha256:1e8165f63568116907f0e48dcf5610095f90eac0e3de4f004823f58e6635baf5 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:07:38 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:49:11 (UTC) | 3 | 2.8 KB |