nf-core/blast/updateblastdb @ 0.0.0-3fc6d40
Summary
Downloads a BLAST database from NCBI
Get started
Add the following snippet to your workflow script to include this module.
include { BLAST_UPDATEBLASTDB } from 'nf-core/blast/updateblastdb'
License
MIT License
Process
Name
|
BLAST_UPDATEBLASTDB |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'mito', single_end:false ] |
|---|---|
name
string
|
Name of the NCBI BLAST database to be downloaded |
Output
2 channels
#1
db
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'mito', single_end:false ] |
|---|---|
prefix
directory
|
Output directory containing blast database files *
|
#2
versions_updateblastdb
tuple
${task.process}
string
|
The name of the process |
|---|---|
updateblastdb
string
|
The name of the tool |
update_blastdb.pl -version 2>&1 | tail -n1 | rev | cut -f1 -d ' ' | rev
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| blast | BLAST finds regions of similarity between biological sequences. | https://blast.ncbi.nlm.nih.gov/Blast.cgi |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:04:58 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fblast%2Fupdateblastdb/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/blast/updateblastdb/blobs/sha256:0a24a087651072e6128347c626606a954a89a1d7abc13dcc83a1b6acd7dfb39a |
| Size | 2.2 KB |
| Checksum | sha256:0a24a087651072e6128347c626606a954a89a1d7abc13dcc83a1b6acd7dfb39a |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:07:40 (UTC) | 4 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:04:58 (UTC) | 3 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:49:15 (UTC) | 3 | 2.2 KB |