nf-core/blat @ 0.0.0-7f68141
Summary
Queries a sequence subject
Get started
Add the following snippet to your workflow script to include this module.
include { BLAT } from 'nf-core/blat'
License
MIT License
Process
Name
|
BLAT |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
query
file
|
Sequence file *.{fasta,fasta.gz,fa,fa.gz,nib,2bit}
|
#2
tuple
meta2
map
|
Groovy Map containing subject information e.g. |
|---|---|
subject
file
|
Sequence file *.{fa,nib,2bit}
|
Output
2 channels
#1
psl
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.psl
file
|
Search results *.{psl}
|
#2
versions_blat
tuple
${task.process}
string
|
The name of the process |
|---|---|
blat
string
|
The name of the tool |
blat 2>&1 | sed '1!d;s/^.*BLAT v. //;s/ fast.*//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| blat | BLAT is a bioinformatics software tool which performs rapid mRNA/DNA and cross-species protein alignments. | https://kentinformatics.com/ |
| Version | 0.0.0-7f68141 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 16 Apr 2026 15:00:28 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fblat/0.0.0-7f68141/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/blat/blobs/sha256:87b272f815a1b74225dc06d7c6b801a530df5c128ee82ca04820ee547f34052b |
| Size | 2.5 KB |
| Checksum | sha256:87b272f815a1b74225dc06d7c6b801a530df5c128ee82ca04820ee547f34052b |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:07:41 (UTC) | 5 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:04:59 (UTC) | 4 | 2.5 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:00:28 (UTC) | 3 | 2.5 KB | |
| 0.0.0-22e46af | 15 Apr 2026 15:00:19 (UTC) | 2 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:49:17 (UTC) | 3 | 2.4 KB |