Nextflow Modules
Showing module(s) with keyword "search"
| Module | Keywords | Description |
|---|---|---|
| nf-core/blat | blat sequence search | Queries a sequence subject |
| nf-core/entrezdirect/esearch | public datasets entrez search ncbi database | Searches a term in a public NCBI database |
| nf-core/entrezdirect/xtract | public datasets entrez search ncbi database | Queries an NCBI database using an UID |
| nf-core/hmmer/hmmbuild | search hidden Markov model HMM hmmer hmmsearch | create an hmm profile from a multiple sequence alignment |
| nf-core/macsyfinder/search | genomics protein macromolecular systems hmmer search | Search for macromolecular systems in protein datasets using MacSyFinder |
| nf-core/ripgrep | search regex patterns | ripgrep recursively searches directories for a regex pattern |
| nf-core/skani/search | skani metagenomics genome alignment search | Memory-efficient ANI database queries with skani. |
| nf-core/tidk/explore | genomics telomere search | `tidk explore` attempts to find the simple telomeric repeat unit in the genome provided. It will report this repeat in its canonical form (e.g. TTAGG -> AACCT). |
| nf-core/tidk/plot | genomics telomere search plot | Plots telomeric repeat frequency against sliding window location using data produced by `tidk/search` |
| nf-core/tidk/search | genomics telomere search | Searches a genome for a telomere string such as TTAGGG |