nf-core/busco/phylogenomics @ 0.0.0-6c4ed3a
Summary
Construct species phylogenies using BUSCO proteins
Get started
Add the following snippet to your workflow script to include this module.
include { BUSCO_PHYLOGENOMICS } from 'nf-core/busco/phylogenomics'
License
MIT License
Process
Name
|
BUSCO_PHYLOGENOMICS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
busco
directory
|
BUSCO lineage specific output *
|
Output
3 channels
#1
gene_trees
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/gene_trees_single_copy/
directory
|
Gene trees of BUSCO families ${prefix}/gene_trees_single_copy
|
#2
supermatrix
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/supermatrix/
directory
|
Concatenated supermatrix alignments of BUSCO families ${prefix}/supermatrix
|
#3
versions_buscophylogenomics
tuple
${task.process}
string
|
The name of the process |
|---|---|
busco_phylogenomics
string
|
The name of the tool |
echo 20240919
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| busco | Construct species phylogenies using BUSCO proteins | https://github.com/jamiemcg/BUSCO_phylogenomics |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:08:02 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbusco%2Fphylogenomics/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/busco/phylogenomics/blobs/sha256:c38cc1871e959570e6c1769508008b3345cf4fb62b35edde12331dca85de67df |
| Size | 2.7 KB |
| Checksum | sha256:c38cc1871e959570e6c1769508008b3345cf4fb62b35edde12331dca85de67df |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:02 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:05:00 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:49:44 (UTC) | 3 | 2.6 KB |