nf-core/cadd @ 0.0.0-0c7146d
Summary
CADD is a tool for scoring the deleteriousness of single nucleotide variants as well as insertion/deletions variants in the human genome.
Get started
Add the following snippet to your workflow script to include this module.
include { CADD } from 'nf-core/cadd'
License
MIT License
Name
|
CADD |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
Input file for annotation in vcf or vcf.gz format *.{vcf,vcf.gz}
|
meta2
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
annotation_dir
directory
|
Path to folder containing the vcf files with precomputed CADD scores. This folder contains the uncompressed files that would otherwise be in data/annotation folder as described in https://github.com/kircherlab/CADD-scripts/#manual-installation. |
meta3
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
prescored_dir
directory
|
Path to folder containing prescored CADD score files. Expected structure mirrors data/prescored/ from the CADD-scripts installation: <prescored_dir>/ GRCh38_v1.7/ incl_anno/ # *.tsv.gz + *.tsv.gz.tbi (scores with annotations) no_anno/ # *.tsv.gz + *.tsv.gz.tbi (scores only) GRCh37_v1.7/ incl_anno/ no_anno/ See https://github.com/kircherlab/CADD-scripts/#manual-installation for details. |
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.tsv.gz
file
|
Annotated tsv file *.{tsv,tsv.gz}
|
versions_cadd
tuple
${task.process}
string
|
The name of the process |
|---|---|
cadd
string
|
The name of the tool |
1.7.3
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cadd | CADD scripts release for offline scoring | https://cadd.gs.washington.edu/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0c7146d85582628b5d1034504702fa808632b1af |
| Release Date | 08 Apr 2026 18:50:11 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcadd/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cadd/blobs/sha256:973eabd71990a1ff5128bd385dff38c17dd45f310686fdd54bd90cc45303fd06 |
| Size | 2.8 KB |
| Checksum | sha256:973eabd71990a1ff5128bd385dff38c17dd45f310686fdd54bd90cc45303fd06 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:50:11 (UTC) | 4 | 2.8 KB |