nf-core/catpack/addnames @ 0.0.0-6c4ed3a
Summary
Taxonomic classification of long DNA sequences and metagenome assembled genomes (e.g. MAGs / bins).
Get started
Add the following snippet to your workflow script to include this module.
include { CATPACK_ADDNAMES } from 'nf-core/catpack/addnames'
License
MIT License
Process
Name
|
CATPACK_ADDNAMES |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
input
file
|
Classification or ORF2LCA output file from CAT/BAT/RAT *.txt
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. |
|---|---|
taxonomy
directory
|
Directory containing taxonomy files: names.dmp, nodes.dmp, acc2taxid.txt */
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.txt
map
|
CAT/BAT/RAT classification file with added taxonomic names *.{bam,cram,sam}
|
#2
versions_catpack
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
catpack
string
|
The tool name |
CAT_pack --version | sed 's/CAT_pack pack v//g;s/ .*//g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| catpack | CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) | https://github.com/MGXlab/CAT_pack |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:08:32 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcatpack%2Faddnames/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/catpack/addnames/blobs/sha256:50ce9123416c966f86ea2a9737449775b31229e0fd59c16a4545cc9fd854ba96 |
| Size | 2.7 KB |
| Checksum | sha256:50ce9123416c966f86ea2a9737449775b31229e0fd59c16a4545cc9fd854ba96 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:32 (UTC) | 4 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:05:10 (UTC) | 1 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:50:23 (UTC) | 1 | 2.7 KB |