Nextflow Modules
Showing module(s) with keyword "mags"
| Module | Keywords | Description |
|---|---|---|
| nf-core/catpack/addnames | taxonomic classification classification long reads mags assembly | Taxonomic classification of long DNA sequences and metagenome assembled genomes (e.g. MAGs / bins). |
| nf-core/catpack/bins | taxonomic classification classification long reads mags assembly | Taxonomic classification of long DNA sequences and metagenome assembled genomes (e.g. MAGs / bins). |
| nf-core/catpack/contigs | taxonomic classification classification long reads mags assembly | Taxonomic classification of long DNA sequences and metagenome assembled genomes (e.g. contigs, MAGs / bins). |
| nf-core/catpack/reads | taxonomic classification classification long reads mags assembly abundance taxonomic composition | Taxonomic classification plus read-based abundance estimation from long DNA sequences and metagenome assembled genomes (e.g. contigs, MAGs / bins). |
| nf-core/catpack/summarise | taxonomic classification classification long reads mags assembly | Summarises results from CAT/BAT/RAT classification steps |
| nf-core/cmseq/polymut | polymut polymorphic mags assembly polymorphic sites estimation protein coding genes cmseq bam coverage | Calculates polymorphic site rates over protein coding genes |
| nf-core/concoct/concoct | contigs fragment mags binning concoct kmer nucleotide composition metagenomics bins | Unsupervised binning of metagenomic contigs by using nucleotide composition - kmer frequencies - and coverage data for multiple samples |
| nf-core/concoct/concoctcoveragetable | contigs fragment mags binning bed bam subcontigs coverage | Generate the input coverage table for CONCOCT using a BEDFile |
| nf-core/concoct/cutupfasta | contigs fragment mags binning fasta cut cut up | Cut up fasta file in non-overlapping or overlapping parts of equal length. |
| nf-core/concoct/extractfastabins | contigs fragment mags binning fasta cut cut up bins merge | Creates a FASTA file for each new cluster assigned by CONCOCT |
| nf-core/concoct/mergecutupclustering | contigs fragment mags binning fasta cut cut up merge | Merge consecutive parts of the original contigs original cut up by cut_up_fasta.py |
| nf-core/maxbin2 | metagenomics assembly binning maxbin2 de novo assembly mags metagenome-assembled genomes contigs | MaxBin is a software that is capable of clustering metagenomic contigs |