nf-core/catpack/summarise @ 0.0.0-6c4ed3a
Summary
Summarises results from CAT/BAT/RAT classification steps
Get started
Add the following snippet to your workflow script to include this module.
include { CATPACK_SUMMARISE } from 'nf-core/catpack/summarise'
License
MIT License
Name
|
CATPACK_SUMMARISE |
|---|
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
classification
file
|
CAT/BAT/RAT classification table annotated with official names (from CAT_pack addnames) *.txt
|
meta2
map
|
Groovy Map containing sample information e.g. |
|---|---|
contigs
file
|
Optional nucleotide FASTA file containing long DNA sequences such as contigs that were classified (only if classification table is from CAT_pack contigs) *.{fasta,fna,fa,fas}
|
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.txt
file
|
Summary statistics table of CAT/BAT/RAT results *.txt
|
versions_catpack
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
catpack
string
|
The tool name |
CAT_pack --version | sed 's/CAT_pack pack v//g;s/ .*//g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| catpack | CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) | https://github.com/MGXlab/CAT_pack |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:08:41 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcatpack%2Fsummarise/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/catpack/summarise/blobs/sha256:70bfdcacf3c160da8bc3e81df56d7cbaaf3a809428e7c6494becc2e7226c5e20 |
| Size | 3.0 KB |
| Checksum | sha256:70bfdcacf3c160da8bc3e81df56d7cbaaf3a809428e7c6494becc2e7226c5e20 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:41 (UTC) | 3 | 3.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:05:17 (UTC) | 3 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:50:34 (UTC) | 3 | 3.0 KB |