nf-core/cdhit/cdhit @ 0.0.0-3fc6d40
Summary
Cluster protein sequences using sequence similarity
Get started
Add the following snippet to your workflow script to include this module.
include { CDHIT_CDHIT } from 'nf-core/cdhit/cdhit'
License
MIT License
Process
Name
|
CDHIT_CDHIT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
sequences
file
|
fasta file of sequences to be clustered *.{fa,fasta}
|
Output
3 channels
#1
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fasta
file
|
fasta file of the representative sequences for each cluster *.{fasta}
|
#2
clusters
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.clstr
file
|
List of clusters *.{clstr}
|
#3
versions_cdhit
tuple
${task.process}
string
|
The name of the process |
|---|---|
cdhit
string
|
The name of the tool |
cd-hit -h | sed -n '1s/.*version \([0-9.]*\).*/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cdhit | Clusters and compares protein or nucleotide sequences | https://sites.google.com/view/cd-hit/home |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:05:19 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcdhit%2Fcdhit/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cdhit/cdhit/blobs/sha256:4c59028b7a8fcf73c614df70f23d400b2308cc68e91d5e511d093dee64ba4e65 |
| Size | 2.5 KB |
| Checksum | sha256:4c59028b7a8fcf73c614df70f23d400b2308cc68e91d5e511d093dee64ba4e65 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:42 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:05:19 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:50:36 (UTC) | 4 | 2.4 KB |