nf-core/cdhit/cdhitest @ 0.0.0-6c4ed3a
Summary
Cluster nucleotide sequences using sequence similarity
Get started
Add the following snippet to your workflow script to include this module.
include { CDHIT_CDHITEST } from 'nf-core/cdhit/cdhitest'
License
MIT License
Process
Name
|
CDHIT_CDHITEST |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
sequences
file
|
fasta or fastq file of sequences to be clustered *.{fasta,fastq}
|
Output
3 channels
#1
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{fa,fq}
file
|
fasta or fastq file of the representative sequences for each cluster *.{fasta,fastq}
|
#2
clusters
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.clstr
file
|
List of clusters *.{clstr}
|
#3
versions_cdhitest
tuple
${task.process}
string
|
The name of the process |
|---|---|
cdhit
string
|
The name of the tool |
cd-hit-est -h | sed -n '1s/.*version \([0-9.]*\).*/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cdhit | Clusters and compares protein or nucleotide sequences | https://sites.google.com/view/cd-hit/home |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:08:43 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcdhit%2Fcdhitest/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cdhit/cdhitest/blobs/sha256:fa83b6ad955d1ab588d17672889c6f5821033ab9ff6a4138a04cb0706f44d0cb |
| Size | 2.6 KB |
| Checksum | sha256:fa83b6ad955d1ab588d17672889c6f5821033ab9ff6a4138a04cb0706f44d0cb |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:43 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:05:20 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:50:38 (UTC) | 3 | 2.5 KB |