nf-core/cellranger/mkgtf @ 0.0.0-3fc6d40
Summary
Module to build a filtered GTF needed by the 10x Genomics Cell Ranger tool. Uses the cellranger mkgtf command.
Get started
Add the following snippet to your workflow script to include this module.
include { CELLRANGER_MKGTF } from 'nf-core/cellranger/mkgtf'
License
MIT License
Process
Name
|
CELLRANGER_MKGTF |
|---|
Input
1 channel
gtf
file
|
The reference GTF transcriptome file *.gtf
|
|---|
Output
2 channels
#1
gtf
*.gtf
directory
|
The filtered GTF transcriptome file *.filtered.gtf
|
|---|
#2
versions_cellranger
tuple
${task.process}
string
|
The name of the process |
|---|---|
cellranger
string
|
The name of the tool |
cellranger --version | sed "s/.*-//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cellranger | Cell Ranger by 10x Genomics is a set of analysis pipelines that process Chromium single-cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis, and more. | https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 3fc6d40d163d89ae44d40a00b9017d5a9df5170e |
| Release Date | 22 Apr 2026 15:05:23 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcellranger%2Fmkgtf/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cellranger/mkgtf/blobs/sha256:1691cf3998458279acba8c8f9ce2f4fe442e3a5b96dbb1f8475e264db5a914ea |
| Size | 2.3 KB |
| Checksum | sha256:1691cf3998458279acba8c8f9ce2f4fe442e3a5b96dbb1f8475e264db5a914ea |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-3fc6d40 | 22 Apr 2026 15:05:23 (UTC) | 4 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:50:51 (UTC) | 4 | 2.3 KB |