Nextflow Modules
Showing module(s) with keyword "mkref"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/cellrangerarc/mkgtf | Process | reference mkref index | Module to build a filtered gtf needed by the 10x Genomics Cell Ranger Arc tool. Uses the cellranger-arc mkgtf command. |
| nf-core/cellrangerarc/mkref | Process | reference mkref index | Module to build the reference needed by the 10x Genomics Cell Ranger Arc tool. Uses the cellranger-arc mkref command. |
| nf-core/cellrangeratac/mkref | Process | reference mkref index | Module to build the reference needed by the 10x Genomics Cell Ranger ATAC tool. Uses the cellranger-atac mkref command. |
| nf-core/cellranger/mkgtf | Process | reference mkref index | Module to build a filtered GTF needed by the 10x Genomics Cell Ranger tool. Uses the cellranger mkgtf command. |
| nf-core/cellranger/mkref | Process | reference mkref index | Module to build the reference needed by the 10x Genomics Cell Ranger tool. Uses the cellranger mkref command. |
| nf-core/spaceranger/mkgtf | Process | reference mkref index spaceranger | Module to build a filtered GTF needed by the 10x Genomics Space Ranger tool. Uses the spaceranger mkgtf command. |
| nf-core/spaceranger/mkref | Process | reference mkref index spaceranger | Module to build the reference needed by the 10x Genomics Space Ranger tool. Uses the spaceranger mkref command. |