nf-core/checkqc @ 0.0.0-0c7146d
Summary
A simple program to parse Illumina NGS data and check it for quality criteria
Get started
Add the following snippet to your workflow script to include this module.
include { CHECKQC } from 'nf-core/checkqc'
License
MIT License
Process
Name
|
CHECKQC |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
run_dir
file
|
Illumina sequencing run directory Can be directory or a compressed tar (tar.gz) of the directory |
checkqc_config
file
|
CheckQC configuration file *.{yml,yaml}
|
|---|
Output
2 channels
#1
report
tuple
meta
file
|
CheckQC report in json format *checkqc_report.json
|
|---|---|
*checkqc_report.json
file
|
CheckQC report in json format *checkqc_report.json
|
#2
versions_checkqc
tuple
${task.process}
string
|
The name of the process |
|---|---|
checkqc
string
|
The name of the tool |
checkqc --version | sed -e "s/checkqc, version //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| checkqc | A simple program to parse Illumina NGS data and check it for quality criteria. | https://github.com/Molmed/checkQC |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:51:30 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcheckqc/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/checkqc/blobs/sha256:2fd7daf57af31c0c70b5835ce23f4dd51c5d8bf153711d8c022858bbfa85f4d4 |
| Size | 3.4 KB |
| Checksum | sha256:2fd7daf57af31c0c70b5835ce23f4dd51c5d8bf153711d8c022858bbfa85f4d4 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:09:00 (UTC) | 3 | 3.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:51:30 (UTC) | 4 | 3.4 KB |