Nextflow Modules
Showing module(s) with keyword "QC"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| cellgeni/starsoloqc | Process | STARsolo STAR QC quality control single-cell 10x RNA-seq | Collects QC statistics from STARsolo output directories, producing a merged TSV summary of alignment and cell-calling metrics across all samples in a dataset. |
| nf-core/checkqc | Process | QC Illumina genomics | A simple program to parse Illumina NGS data and check it for quality criteria |
| nf-core/fgbio/collectduplexseqmetrics | Process | UMIs QC bam duplex | Collects a suite of metrics to QC duplex sequencing data. |
| nf-core/fgumi/duplexmetrics | Process | UMIs QC bam duplex metrics | Collects a suite of metrics to QC duplex sequencing data |
| nf-core/fgumi/simplexmetrics | Process | UMIs QC bam simplex metrics | Collects a suite of metrics to QC simplex (single-strand) UMI sequencing data |
| nf-core/filtlong | Process | nanopore quality control QC filtering long reads short reads | Filtlong filters long reads based on quality measures or short read data. |
| nf-core/mirtrace/qc | Process | microRNA smrnaseq QC | A tool for quality control and tracing taxonomic origins of microRNA sequencing data |
| nf-core/multiqc | Process | QC bioinformatics tools Beautiful stand-alone HTML report | Aggregate results from bioinformatics analyses across many samples into a single report |
| nf-core/multiqcsav | Process | QC bioinformatics tools Beautiful stand-alone HTML report Illumina Sequencing Analysis Viewer SAV | Aggregate results from bioinformatics analyses across many samples into a single report, with support for multiqc_sav plugin |
| nf-core/nanofilt | Process | nanopore filtering QC | Filtering and trimming of Oxford Nanopore Sequencing data |
| nf-core/phantompeakqualtools | Process | ChIP-Seq QC phantom peaks | "This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays." |
| nf-core/somalier/ancestry | Process | relatedness QC bam cram vcf gvcf ancestry identity kinship informative sites family | Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs |
| nf-core/somalier/extract | Process | relatedness QC bam cram vcf gvcf ancestry identity kinship informative sites family | Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs |
| nf-core/somalier/relate | Process | relatedness QC bam cram vcf gvcf ancestry identity kinship informative sites family | Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs |