nf-core/chromap/index @ 0.0.0-20423f5
Summary
Indexes a fasta reference genome ready for chromatin profiling.
Get started
Add the following snippet to your workflow script to include this module.
include { CHROMAP_INDEX } from 'nf-core/chromap/index'
License
MIT License
Process
Name
|
CHROMAP_INDEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
Reference genome FASTA file *.{fa,fasta,fna}
|
fai
file
|
Reference genome FASTA index file *.{fai}
|
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
*.index
file
|
Index file of the reference genome *.{index}
|
#2
versions_chromap
tuple
${task.process}
string
|
The name of the process |
|---|---|
chromap
string
|
The name of the tool |
chromap --version 2>&1
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| chromap | Fast alignment and preprocessing of chromatin profiles | https://github.com/haowenz/chromap |
| Version | 0.0.0-20423f5 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 14 Apr 2026 15:00:10 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fchromap%2Findex/0.0.0-20423f5/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/chromap/index/blobs/sha256:070a242d42d25514f65eb74155ca565a7a1408e6b929a916034ed9136dbd9402 |
| Size | 2.3 KB |
| Checksum | sha256:070a242d42d25514f65eb74155ca565a7a1408e6b929a916034ed9136dbd9402 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:09:10 (UTC) | 3 | 2.2 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:00:44 (UTC) | 4 | 2.3 KB | |
| 0.0.0-20423f5 | 14 Apr 2026 15:00:10 (UTC) | 3 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:51:45 (UTC) | 3 | 2.2 KB |