nf-core/clippy @ 0.0.0-6c4ed3a
Summary
Runs the Clippy CLIP peak caller
Get started
Add the following snippet to your workflow script to include this module.
include { CLIPPY } from 'nf-core/clippy'
License
MIT License
Process
Name
|
CLIPPY |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
BED file of crosslinks *.{bed,bed.gz}
|
gtf
file
|
A GTF file of genes to call peaks on *.{gtf}
|
|---|
fai
file
|
FAI file corresponding to the reference sequence *.{fai}
|
|---|
Output
4 channels
#1
peaks
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*_Peaks.bed
file
|
BED file of peaks called by Clippy *_broadPeaks.bed.gz
|
#2
summits
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*_Summits.bed
file
|
BED file of peak summits called by Clippy *[0-9].bed.gz
|
#3
intergenic_gtf
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*_intergenic_regions.gtf
file
|
GTF file of intergenic regions *_intergenic_regions.gtf
|
#4
versions_clippy
tuple
${task.process}
string
|
The name of the process |
|---|---|
clippy
string
|
The name of the tool |
clippy -v
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| clippy | An intuitive and interactive peak caller for CLIP data | https://github.com/ulelab/clippy |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:09:21 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fclippy/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/clippy/blobs/sha256:484f87e36b163276a5a90bdcf7f6ec164cfd946e41a9d87c67415d031a09205d |
| Size | 2.7 KB |
| Checksum | sha256:484f87e36b163276a5a90bdcf7f6ec164cfd946e41a9d87c67415d031a09205d |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:09:21 (UTC) | 4 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:06:02 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:52:02 (UTC) | 4 | 2.6 KB |