nf-core/cnvpytor/callcnvs @ 0.0.0-3fc6d40
Summary
Command line tool for calling CNVs in whole genome sequencing data
Get started
Add the following snippet to your workflow script to include this module.
include { CNVPYTOR_CALLCNVS } from 'nf-core/cnvpytor/callcnvs'
License
MIT License
Process
Name
|
CNVPYTOR_CALLCNVS |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
pytor
file
|
pytor file containing partitions of read depth histograms using mean-shift method *.{pytor}
|
bin_sizes
string
|
list of binsizes separated by space e.g. "1000 10000" and "1000" |
|---|
Output
2 channels
#1
pytor
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${pytor.baseName}.pytor
file
|
pytor files containing cnv calls *.{pytor}
|
#2
versions_cnvpytor
tuple
${task.process}
string
|
The name of the process |
|---|---|
cnvpytor
string
|
The name of the tool |
cnvpytor --version | sed -n 's/.*CNVpytor \(.*\)/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cnvpytor | calling CNVs using read depth | https://github.com/abyzovlab/CNVpytor |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:07:20 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcnvpytor%2Fcallcnvs/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cnvpytor/callcnvs/blobs/sha256:df2e9a919f8c6face306141f7d4c36509f0a819172262a869e93e04e452513f4 |
| Size | 2.2 KB |
| Checksum | sha256:df2e9a919f8c6face306141f7d4c36509f0a819172262a869e93e04e452513f4 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:10:49 (UTC) | 3 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:07:20 (UTC) | 3 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:53:18 (UTC) | 4 | 2.2 KB |