nf-core/cnvpytor/histogram @ 0.0.0-0c7146d
Summary
calculates read depth histograms
Get started
Add the following snippet to your workflow script to include this module.
include { CNVPYTOR_HISTOGRAM } from 'nf-core/cnvpytor/histogram'
License
MIT License
Process
Name
|
CNVPYTOR_HISTOGRAM |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
pytor
file
|
pytor file containing read depth data *.{pytor}
|
bin_sizes
string
|
list of binsizes separated by space e.g. "1000 10000" and "1000" |
|---|
Output
2 channels
#1
pytor
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${pytor.baseName}.pytor
file
|
pytor file containing read depth histograms binned based on given bin size(s) *.{pytor}
|
#2
versions_cnvpytor
tuple
${task.process}
string
|
The name of the process |
|---|---|
cnvpytor
string
|
The name of the tool |
1.3.2
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cnvpytor | calling CNVs using read depth | https://github.com/abyzovlab/CNVpytor |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:53:20 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcnvpytor%2Fhistogram/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cnvpytor/histogram/blobs/sha256:e7c57101a4f308a446340fdc0d3070b5e979996148b24b432bcc4a95ed84f647 |
| Size | 2.4 KB |
| Checksum | sha256:e7c57101a4f308a446340fdc0d3070b5e979996148b24b432bcc4a95ed84f647 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:10:50 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:53:20 (UTC) | 4 | 2.4 KB |