Nextflow Modules
Showing module(s) with keyword "histogram"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bedtools/coverage | Process | bedtools coverage bam bed gff vcf histogram | computes both the depth and breadth of coverage of features in file B on the features in file A |
| nf-core/bedtools/genomecov | Process | bed bam genomecov bedtools histogram | Computes histograms (default), per-base reports (-d) and BEDGRAPH (-bg) summaries of feature coverage (e.g., aligned sequences) for a given genome. |
| nf-core/cnvpytor/histogram | Process | cnv calling histogram read depth | calculates read depth histograms |
| nf-core/cnvpytor/partition | Process | cnv call partition histogram | Calculate segmentation for specified bin size (multiple bin sizes separate by space) |
| nf-core/fastk/fastk | Process | k-mer count histogram | A fast K-mer counter for high-fidelity shotgun datasets |
| nf-core/fastk/histex | Process | k-mer histogram fastk | A fast K-mer counter for high-fidelity shotgun datasets |
| nf-core/fastk/merge | Process | merge k-mer histogram fastk | A tool to merge FastK histograms |
| nf-core/genescopefk | Process | k-mer genome profile histogram | A derivative of GenomeScope2.0 modified to work with FastK |
| nf-core/kat/hist | Process | k-mer histogram count | Creates a histogram of the number of distinct k-mers having a given frequency. |
| nf-core/meryl/histogram | Process | k-mer histogram reference-free | A genomic k-mer counter (and sequence utility) with nice features. |