nf-core/conifer @ 0.0.0-6c4ed3a
Summary
Calculate confidence scores from Kraken2 output
Get started
Add the following snippet to your workflow script to include this module.
include { CONIFER } from 'nf-core/conifer'
License
MIT License
Process
Name
|
CONIFER |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
kraken_result
file
|
Raw Kraken2 standard output file |
kraken_taxon_db
file
|
Kraken2 taxo.k2d database file |
|---|
Output
2 channels
#1
score
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.score
file
|
Conifer report file containing confidence scores of Kraken2 classified reads. *.score
|
#2
versions_conifer
tuple
${task.process}
string
|
The name of the process |
|---|---|
conifer
string
|
The name of the tool |
conifer --version 2>&1 | sed 's/^.*Conifer //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| conifer | Calculate confidence scores from Kraken2 output | https://github.com/Ivarz/Conifer |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:11:10 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fconifer/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/conifer/blobs/sha256:f4f83d5d4f09ea2726332aa9925829465886c4074406bcd24c5bf7d6fc14cba2 |
| Size | 2.3 KB |
| Checksum | sha256:f4f83d5d4f09ea2726332aa9925829465886c4074406bcd24c5bf7d6fc14cba2 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:10 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:07:39 (UTC) | 4 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:53:48 (UTC) | 3 | 2.3 KB |