Nextflow Modules
Showing module(s) with keyword "kraken2"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bracken/bracken | bracken metagenomics abundance kraken2 | Re-estimate taxonomic abundance of metagenomic samples analyzed by kraken. |
| nf-core/bracken/build | kraken2 bracken database build | Extends a Kraken2 database to be compatible with Bracken |
| nf-core/conifer | classify metagenomics kraken2 confidence | Calculate confidence scores from Kraken2 output |
| nf-core/kraken2/add | metagenomics db classification build kraken2 add | Adds fasta files to a Kraken2 taxonomic database |
| nf-core/kraken2/build | metagenomics db classification build kraken2 | Builds Kraken2 database |
| nf-core/kraken2/buildstandard | metagenomics db classification build kraken2 standard download | Downloads and builds Kraken2 standard database |
| nf-core/krakentools/extractkrakenreads | kraken2 krakentools metagenomics | Extract reads classified at any user-specified taxonomy IDs. |