|
nf-core/bracken/bracken
|
Process
|
bracken
metagenomics
abundance
kraken2
|
Re-estimate taxonomic abundance of metagenomic samples analyzed by kraken.
|
|
nf-core/bracken/build
|
Process
|
kraken2
bracken
database
build
|
Extends a Kraken2 database to be compatible with Bracken
|
|
nf-core/conifer
|
Process
|
classify
metagenomics
kraken2
confidence
|
Calculate confidence scores from Kraken2 output
|
|
nf-core/fasta_build_add_kraken2
|
Workflow
|
metagenomics
kraken2
database
build
custom
|
KRAKEN2 build custom database subworkflow
|
|
nf-core/fasta_build_add_kraken2_bracken
|
Workflow
|
metagenomics
kraken2
database
build
custom
bracken
|
KRAKEN2 and BRACKEN build custom database subworkflow
|
|
nf-core/fastq_extract_kraken_krakentools
|
Workflow
|
classify
metagenomics
fastq
db
kraken2
krakentools
extract
extractreads
|
Extract classified Kraken2 reads by taxonomic id
|
|
nf-core/kraken2/add
|
Process
|
metagenomics
db
classification
build
kraken2
add
|
Adds fasta files to a Kraken2 taxonomic database
|
|
nf-core/kraken2/build
|
Process
|
metagenomics
db
classification
build
kraken2
|
Builds Kraken2 database
|
|
nf-core/kraken2/buildstandard
|
Process
|
metagenomics
db
classification
build
kraken2
standard
download
|
Downloads and builds Kraken2 standard database
|
|
nf-core/krakentools/extractkrakenreads
|
Process
|
kraken2
krakentools
metagenomics
|
Extract reads classified at any user-specified taxonomy IDs.
|