×

Nextflow Modules

Clear

Showing module(s) with keyword "classify"

Module Keywords Description
nf-core/centrifuge/centrifuge classify metagenomics fastq db Classifies metagenomic sequence data
nf-core/centrifuge/kreport classify metagenomics fastq db report kraken Creates Kraken-style reports from centrifuge out files
nf-core/conifer classify metagenomics kraken2 confidence Calculate confidence scores from Kraken2 output
nf-core/ganon/classify ganon metagenomics profiling taxonomy k-mer classification classify Classify FASTQ files against ganon database
nf-core/haplogrep2/classify haplogroups classify mtDNA classification into haplogroups
nf-core/haplogrep3/classify haplogroups classify mtDNA classification into haplogroups
nf-core/kaiju/kaiju classify metagenomics fastq taxonomic profiling Taxonomic classification of metagenomic sequence data using a protein reference database
nf-core/kaiju/kaiju2table classify metagenomics taxonomic profiling write your description here
nf-core/kaiju/mergeoutputs classify metagenomics fastq taxonomic profiling Merge two tab-separated output files of Kaiju and Kraken in the column format
nf-core/kaiju/mkfmi classify metagenomics fastq taxonomic profiling database index Make Kaiju FMI-index file from a protein FASTA file
nf-core/kmcp/compute metagenomics classify taxonomic profiling fastq sequences kmers Generate k-mers (sketches) from FASTA/Q sequences
nf-core/kmcp/index metagenomics classify taxonomic profiling fastq sequences kmers index Construct KMCP database from k-mer files
nf-core/kmcp/merge metagenomics classify taxonomic profiling fastq sequences kmers Merge search results from multiple databases.
nf-core/kmcp/profile metagenomics classify taxonomic profiling fastq sequences kmers index Generate taxonomic profile from search results
nf-core/kmcp/search metagenomics classify taxonomic profiling fastq sequences kmers Search sequences against database
nf-core/kraken2/kraken2 classify metagenomics fastq db Classifies metagenomic sequence data
nf-core/krakenuniq/preloadedkrakenuniq classify metagenomics kmers fastq db Classifies metagenomic sequence data using unique k-mer counts
nf-core/motus/downloaddb classify metagenomics fastq taxonomic profiling database download Download the mOTUs database
nf-core/motus/merge classify metagenomics