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Showing module(s) with keyword "classify"

Module Kind Keywords Description
nf-core/centrifuge/centrifuge Process classify metagenomics fastq db Classifies metagenomic sequence data
nf-core/centrifuge/kreport Process classify metagenomics fastq db report kraken Creates Kraken-style reports from centrifuge out files
nf-core/conifer Process classify metagenomics kraken2 confidence Calculate confidence scores from Kraken2 output
nf-core/fastq_extract_kraken_krakentools Workflow classify metagenomics fastq db kraken2 krakentools extract extractreads Extract classified Kraken2 reads by taxonomic id
nf-core/ganon/classify Process ganon metagenomics profiling taxonomy k-mer classification classify Classify FASTQ files against ganon database
nf-core/haplogrep2/classify Process haplogroups classify mtDNA classification into haplogroups
nf-core/haplogrep3/classify Process haplogroups classify mtDNA classification into haplogroups
nf-core/kaiju/kaiju Process classify metagenomics fastq taxonomic profiling Taxonomic classification of metagenomic sequence data using a protein reference database
nf-core/kaiju/kaiju2table Process classify metagenomics taxonomic profiling write your description here
nf-core/kaiju/mergeoutputs Process classify metagenomics fastq taxonomic profiling Merge two tab-separated output files of Kaiju and Kraken in the column format
nf-core/kaiju/mkfmi Process classify metagenomics fastq taxonomic profiling database index Make Kaiju FMI-index file from a protein FASTA file
nf-core/kmcp/compute Process metagenomics classify taxonomic profiling fastq sequences kmers Generate k-mers (sketches) from FASTA/Q sequences
nf-core/kmcp/index Process metagenomics classify taxonomic profiling fastq sequences kmers index Construct KMCP database from k-mer files
nf-core/kmcp/merge Process metagenomics classify taxonomic profiling fastq sequences kmers Merge search results from multiple databases.
nf-core/kmcp/profile Process metagenomics classify taxonomic profiling fastq sequences kmers index Generate taxonomic profile from search results
nf-core/kmcp/search Process metagenomics classify taxonomic profiling fastq sequences kmers Search sequences against database
nf-core/kraken2/kraken2 Process classify metagenomics fastq