nf-core/controlfreec/assesssignificance @ 0.0.0-6c4ed3a
Summary
Add both Wilcoxon test and Kolmogorov-Smirnov test p-values to each CNV output of FREEC
Get started
Add the following snippet to your workflow script to include this module.
include { CONTROLFREEC_ASSESSSIGNIFICANCE } from 'nf-core/controlfreec/assesssignificance'
License
MIT License
Process
Name
|
CONTROLFREEC_ASSESSSIGNIFICANCE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
cnvs
file
|
_CNVs file generated by FREEC *._CNVs
|
ratio
file
|
ratio file generated by FREEC *.ratio.txt
|
Output
2 channels
#1
p_value_txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.p.value.txt
file
|
CNV file containing p_values for each call *.p.value.txt
|
#2
versions_controlfreec
tuple
${task.process}
string
|
The name of the process |
|---|---|
controlfreec
string
|
The name of the tool |
11.6b
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| controlfreec/assesssignificance | Copy number and genotype annotation from whole genome and whole exome sequencing data. | http://boevalab.inf.ethz.ch/FREEC |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:11:11 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcontrolfreec%2Fassesssignificance/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/controlfreec/assesssignificance/blobs/sha256:95962489925d04f5a5548e1972c2f8973f753b515c6ba64bfe43330b722cd002 |
| Size | 3.3 KB |
| Checksum | sha256:95962489925d04f5a5548e1972c2f8973f753b515c6ba64bfe43330b722cd002 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:11 (UTC) | 3 | 3.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:07:40 (UTC) | 3 | 3.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:53:50 (UTC) | 3 | 3.3 KB |