nf-core/cooltools/eigscis @ 0.0.0-3fc6d40
Summary
Perform eigen value decomposition on a cooler matrix to calculate compartment signal by finding the eigenvector that correlates best with the phasing track
Get started
Add the following snippet to your workflow script to include this module.
include { COOLTOOLS_EIGSCIS } from 'nf-core/cooltools/eigscis'
License
MIT License
Process
Name
|
COOLTOOLS_EIGSCIS |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
cool
file
|
cool file *.cool
|
bed
file
|
bed file, phasing track for orienting and ranking eigenvectors, provided as /path/to/track::track_value_column_name *.bed
|
|---|
Output
3 channels
#1
bigwig
tuple
meta
map
|
Groovy Map containing sample information e.g. id:'test' |
|---|---|
*.bw
file
|
bigwig file for compartment track |
#2
result
tuple
meta
map
|
Groovy Map containing sample information e.g. id:'test' |
|---|---|
*compartment*
file
|
BED-like file for compartment track |
#3
versions_cooltools
tuple
${task.process}
string
|
The name of the process |
|---|---|
cooltools
string
|
The name of the tool |
cooltools --version | sed -n 's/cooltools, version //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cooltools | Analysis tools for genomic interaction data stored in .cool format | https://cooltools.readthedocs.io |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:07:57 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcooltools%2Feigscis/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cooltools/eigscis/blobs/sha256:af5762844dcc3a1b7040162665e3a87e74bd3f721ade9d9bc75d69e10a4e0520 |
| Size | 2.4 KB |
| Checksum | sha256:af5762844dcc3a1b7040162665e3a87e74bd3f721ade9d9bc75d69e10a4e0520 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:28 (UTC) | 2 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:07:57 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:54:14 (UTC) | 2 | 2.4 KB |