nf-core/cooltools/insulation @ 0.0.0-0c7146d
Summary
Calculate the diamond insulation scores and call insulating boundaries
Get started
Add the following snippet to your workflow script to include this module.
include { COOLTOOLS_INSULATION } from 'nf-core/cooltools/insulation'
License
MIT License
Process
Name
|
COOLTOOLS_INSULATION |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. id:'test' |
|---|---|
cool
file
|
cool file *.cool
|
Output
3 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. id:'test' |
|---|---|
*tsv
file
|
tsv file with insulation score and boundaries for several window sizes |
#2
bigwig
tuple
meta
map
|
Groovy Map containing sample information e.g. id:'test' |
|---|---|
*.bw
file
|
bigwig file for different window sizes |
#3
versions_cooltools
tuple
${task.process}
string
|
The name of the process |
|---|---|
cooltools
string
|
The name of the tool |
cooltools --version | sed -n 's/cooltools, version //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cooltools | Analysis tools for genomic interaction data stored in .cool format | https://cooltools.readthedocs.io |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:54:16 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcooltools%2Finsulation/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cooltools/insulation/blobs/sha256:bdb180ec2d1aa48cd3c15096467dff894f897cb6f8cac0865ef2cb06536379e5 |
| Size | 2.2 KB |
| Checksum | sha256:bdb180ec2d1aa48cd3c15096467dff894f897cb6f8cac0865ef2cb06536379e5 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:29 (UTC) | 3 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:07:58 (UTC) | 2 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:54:16 (UTC) | 2 | 2.2 KB |