nf-core/coptr/index @ 0.0.0-0c7146d
Summary
Indexes a directory of fasta files for use with CoPTR
Get started
Add the following snippet to your workflow script to include this module.
include { COPTR_INDEX } from 'nf-core/coptr/index'
License
MIT License
Process
Name
|
COPTR_INDEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing genome information |
|---|---|
indexfasta
file
|
Fasta file(s) ending in [.fasta, .fna, .fa] to be used to create the index. *.{.fasta,.fna,.fa}
|
Output
2 channels
#1
index_dir
tuple
meta
map
|
Groovy Map containing genome information |
|---|---|
bowtie2
map
|
index genome directory *.{genome}
|
#2
versions_coptr
tuple
${task.process}
string
|
The name of the process |
|---|---|
coptr
string
|
The name of the tool |
coptr |& sed -E '11!d ; s/CoPTR.*?\(v(.*?)\).*/\1/'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| coptr | Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads. | https://github.com/tyjo/coptr |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:54:21 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcoptr%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/coptr/index/blobs/sha256:62b618b707bade8985cdb921157ac9b77ed2a12b1ce808f16f2f0f1bcfa66595 |
| Size | 2.5 KB |
| Checksum | sha256:62b618b707bade8985cdb921157ac9b77ed2a12b1ce808f16f2f0f1bcfa66595 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:33 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:02 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:54:21 (UTC) | 4 | 2.5 KB |