nf-core/crabs/insilicopcr @ 0.0.0-0c7146d
Summary
CRABS extracts the amplicon region of the primer set by conducting an in silico PCR.
Get started
Add the following snippet to your workflow script to include this module.
include { CRABS_INSILICOPCR } from 'nf-core/crabs/insilicopcr'
License
MIT License
Process
Name
|
CRABS_INSILICOPCR |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
crabsdb
file
|
CRABSDB to conduct in silico PCR on *.txt
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.txt
file
|
Extracted amplicon regions *.insilicopcr.txt
|
#2
versions_crabs
tuple
${task.process}
string
|
The name of the process |
|---|---|
crabs
string
|
The name of the tool |
crabs --help 2>/dev/null | grep -oE 'v[0-9.]+' | cut -c2-
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| crabs | Crabs (Creating Reference databases for Amplicon-Based Sequencing) is a program to download and curate reference databases for eDNA metabarcoding analyses | https://github.com/gjeunen/reference_database_creator |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:54:35 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcrabs%2Finsilicopcr/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/crabs/insilicopcr/blobs/sha256:34fac2b6f96e1e9e06d970c8fa732406ddc9e8eff12b7c8d46dc8f5d9e212e9b |
| Size | 2.5 KB |
| Checksum | sha256:34fac2b6f96e1e9e06d970c8fa732406ddc9e8eff12b7c8d46dc8f5d9e212e9b |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:43 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:07 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:54:35 (UTC) | 3 | 2.5 KB |